Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs57733852 chr14:74484111 T/C 3.72E-7 178 25.28 28.38 7.4 KM Plot
PCPG rs577834 chr10:99699045 C/T 5.45E-5 173 24.52 27.33 19.03 KM Plot
PCPG rs5781474 chr1:227367483 GA/GAA 0.000144 175 25.17 34.17 2.3 KM Plot
PCPG rs57839759 chr12:53500060 ATGTG/A 1.19E-10 175 25 27.08 3.05 KM Plot
PCPG rs57870697 chr12:56752874 A/G 9.85E-8 177 25.35 27.33 9.98 KM Plot
PCPG rs57931052 chr7:158706680 C/T 0 176 25.6 23.43 3.17 KM Plot
PCPG rs57940434 chr16:89975496 G/A 0.00018 173 25.87 20.28 36.37 KM Plot
PCPG rs57986258 chr2:236192499 G/A 3.73E-7 170 27.2 24.7 3.07 KM Plot
PCPG rs5802846 chr13:37506932 T/TAAAAC 4.06E-5 177 56.35 24.23 25.7 KM Plot
PCPG rs58031143 chr17:25586056 T/C 1.31E-5 177 25.28 27.33 13.53 KM Plot
PCPG rs58036138 chr12:21640745 C/T 2.72E-8 174 25.4 25.67 2.28 KM Plot
PCPG rs58126826 chr2:176173057 C/T 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs5815491 chr16:8763230 A/AC 0 178 25.47 23.53 3.17 KM Plot
PCPG rs58204468 chr2:61498662 T/A 8.86E-5 174 20.47 30.63 10.3 KM Plot
PCPG rs58241826 chr13:64098367 C/T 9.78E-8 175 25.87 21.55 18.13 KM Plot